STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3373Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR011991:IPR005149; KEGG: mpl:Mpal_0870 transcriptional regulator, PadR-like family; PFAM: transcriptional regulator PadR family protein; SPTR: C6D3E0 Transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like family. (109 aa)    
Predicted Functional Partners:
Krac_3372
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: mpl:Mpal_0869 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: B8GGH3 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
 
     0.826
Krac_3370
ABC-2 type transporter; InterPro IPR000412:IPR013525; KEGG: ckr:CKR_3119 hypothetical protein; PFAM: ABC-2 type transporter; SPTR: B9DWS7 Putative uncharacterized protein; PFAM: ABC-2 type transporter.
 
     0.766
Krac_3371
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: ckr:CKR_3120 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9DWS8 Putative uncharacterized protein; PFAM: ABC transporter.
  
    0.754
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.