STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3511Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034:IPR013196; KEGG: rmr:Rmar_2755 helix-turn-helix type 11 domain protein; PFAM: Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; SPTR: B9R0X8 HTH domain family; PFAM: HTH domain. (341 aa)    
Predicted Functional Partners:
Krac_3509
Transposase, IS605 OrfB family; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: min:Minf_1900 transposon IS605 OrfB; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: B3DY02 Transposon IS605 OrfB; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.668
Krac_3510
Hypothetical protein; KEGG: etr:ETAE_2623 asparagine synthetase B; SPTR: D0ZCB9 Asparagine synthetase B.
       0.668
Krac_6638
DNA polymerase III, epsilon subunit; COGs: COG1199 Rad3-related DNA helicase; InterProIPR012337:IPR014013:IPR013520:IPR006054:IPR 006055; KEGG: sti:Sthe_1001 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: D1C2H0 Exonuclease RNase T and DNA polymerase III; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
    
  0.603
Krac_3512
COGs: COG0531 Amino acid transporter; InterPro IPR002293:IPR004841; KEGG: aac:Aaci_0619 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: C8WTC5 Amino acid permease-associated region; PFAM: Amino acid permease.
       0.515
Krac_0874
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR012287:IPR009057:IPR000005; KEGG: cpi:Cpin_3282 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: A5KSS5 Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.465
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.