STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3922KEGG: AAA family ATPase; SPTR: Q4UB78 AAA family ATPase, putative. (66 aa)    
Predicted Functional Partners:
Krac_3921
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR011330:IPR002509; KEGG: cai:Caci_6265 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: C1WQZ2 Predicted xylanase/chitin deacetylase; manually curated; PFAM: Polysaccharide deacetylase.
       0.773
Krac_3923
KEGG: lpl:lp_0388 hypothetical protein; SPTR: Q88ZD6 Putative uncharacterized protein lp_0388.
       0.498
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.