STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_3958KEGG: mms:mma_2470 hypothetical protein; SPTR: A6T0W3 Uncharacterized conserved protein. (236 aa)    
Predicted Functional Partners:
Krac_2179
COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: npu:Npun_F5333 glucuronate isomerase HrmI; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Q9KHA1 Uronate isomerase; PFAM: Glucuronate isomerase.
    
 0.704
Krac_5983
KEGG: bra:BRADO4374 hypothetical protein; SPTR: A4YW42 Putative uncharacterized protein.
  
 
 0.692
Krac_4580
Xylan 1,4-beta-xylosidase; COGs: COG3664 Beta-xylosidase; InterProIPR003961:IPR018253:IPR013781:IPR017853:IPR 000514; KEGG: afo:Afer_0170 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: C1WRP1 Beta-xylosidase; PFAM: Glycosyl hydrolases family 39.
     
 0.611
Krac_3959
KEGG: similar to KIAA0454 protein; SPTR: B6RFX3 Labial hox protein.
       0.551
Krac_7091
KEGG: cai:Caci_4167 Ig domain protein group 2 domain protein; SPTR: C7QHY6 Ig domain protein group 2 domain protein; PFAM: Predicted periplasmic protein (DUF2233).
  
 
  0.534
Krac_1856
KEGG: rmr:Rmar_2468 hypothetical protein; SPTR: D0MF89 Putative uncharacterized protein.
  
  0.522
Krac_6071
Glycoside hydrolase family 5; InterPro IPR017853:IPR001547:IPR013781; KEGG: cai:Caci_4280 ricin B lectin; PFAM: glycoside hydrolase family 5; SPTR: B5I5A2 Cellulase Cel5K; PFAM: Cellulase (glycosyl hydrolase family 5).
  
 
  0.518
Krac_0976
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR001956:IPR013781:IPR018087:IPR017853:IPR 008965:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.503
Krac_9959
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterProIPR017853:IPR008965:IPR001956:IPR013781:IPR 018087:IPR001547; KEGG: ace:Acel_0614 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; type 3a cellulose-binding domain protein; SPTR: P54583 Endoglucanase E1; PFAM: Cellulose binding domain; Cellulase (glycosyl hydrolase family 5).
    
 0.503
Krac_3053
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: npu:Npun_F0217 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 43; SPTR: B2J4N3 Glycoside hydrolase, family 43; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
 
  0.502
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.