STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4065SPTR: B8PG30 Predicted protein. (106 aa)    
Predicted Functional Partners:
Krac_4066
RNA-directed DNA polymerase (Reverse transcriptase); COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR003615:IPR000477:IPR013597:IPR002711; KEGG: cyh:Cyan8802_3286 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; HNH endonuclease; SMART: HNH nuclease; SPTR: C7QX81 RNA-directed DNA polymerase (Reverse transcriptase); PFAM: HNH endonuclease; Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain.
       0.701
Krac_4064
COGs: COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); InterPro IPR000816:IPR016125; KEGG: pfu:PF1299 pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; PRIAM: Pyroglutamyl-peptidase I; SPTR: O73944 Pyrrolidone-carboxylate peptidase; PFAM: Pyroglutamyl peptidase; TIGRFAM: pyroglutamyl-peptidase I.
       0.439
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.