STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4148KEGG: ttr:Tter_1119 hypothetical protein; SPTR: D1CB69 Putative uncharacterized protein. (225 aa)    
Predicted Functional Partners:
Krac_4149
Hypothetical protein; KEGG: cyb:CYB_1596 putative sodium channel protein; SPTR: Q2JL59 Putative sodium channel protein.
       0.455
Krac_4147
Appr-1-p processing domain protein; COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: ate:Athe_1660 Appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: Q1N7M2 Putative uncharacterized protein; PFAM: Macro domain.
       0.440
Krac_4150
Major facilitator superfamily MFS_1; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR016196; KEGG: hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: A2QMT6 Contig An07c0080, complete genome; PFAM: Major Facilitator Superfamily.
       0.414
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.