STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4205Transcriptional regulator, MarR family; COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR000835:IPR007324:IPR009057; KEGG: cdl:CDR20291_0024 transcriptional regulator; PFAM: putative sugar-binding domain protein; regulatory protein MarR; SPTR: C7IFK9 Transcriptional regulator, DeoR family; PFAM: Sigma-70, region 4; Putative sugar-binding domain. (321 aa)    
Predicted Functional Partners:
Krac_1362
Dihydroxyacetone kinase, DhaK subunit; COGs: COG2376 Dihydroxyacetone kinase; InterPro IPR004006:IPR012736; KEGG: chl:Chy400_3554 dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; PRIAM: Glycerone kinase; SPTR: D1C9N0 Dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak1 domain; TIGRFAM: dihydroxyacetone kinase, DhaK subunit.
  
  0.958
EFH88607.1
Transcriptional regulator, DeoR family; COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324:IPR009057; KEGG: bpu:BPUM_1177 transcriptional regulator; PFAM: putative sugar-binding domain protein; SPTR: A8FC94 Transcriptional regulator; PFAM: Putative sugar-binding domain.
  
     0.775
trpB-2
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.727
trpA-2
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.727
Krac_1361
Dihydroxyacetone kinase, L subunit; COGs: COG2376 Dihydroxyacetone kinase; InterPro IPR004007:IPR012737; KEGG: chl:Chy400_1441 dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; SPTR: B9LC65 Dihydroxyacetone kinase, L subunit; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: DAK2 domain; TIGRFAM: dihydroxyacetone kinase, phosphoprotein-dependent, L subunit.
 
  
  0.635
Krac_1360
Dihydroxyacetone kinase, phosphotransfer subunit; COGs: COG3412 conserved hypothetical protein; InterPro IPR004701:IPR012844; KEGG: cag:Cagg_2005 dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; SPTR: D1C9M7 Dihydroxyacetone kinase, phosphotransfer subunit; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose IIA component; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit.
  
  
  0.610
Krac_7275
FAD dependent oxidoreductase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR000447:IPR006076; KEGG: ttr:Tter_0471 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: D1CEN6 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.505
Krac_4204
KEGG: pcl:Pcal_0907 hypothetical protein; SPTR: C6QRN7 Drug resistance transporter, EmrB/QacA subfamily.
       0.475
gpsA
COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterProIPR011128:IPR006109:IPR006168:IPR010916:IPR 008927:IPR016040:IPR013328; KEGG: nth:Nther_1628 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: A1HTV2 Glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus.
    
  0.470
Krac_4203
Hypothetical protein; KEGG: lsp:Bsph_2453 ABC transporter ATP-binding protein; SPTR: B1HXN1 Hypothetical ABC transporter ATP-binding protein.
       0.430
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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