STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4221Zinc finger SWIM domain protein; COGs: COG4715 conserved hypothetical protein; InterPro IPR007527; KEGG: ana:all4744 hypothetical protein; PFAM: zinc finger SWIM domain protein; SPTR: Q8YN26 All4744 protein; PFAM: SWIM zinc finger. (632 aa)    
Predicted Functional Partners:
Krac_1854
TnsA endonuclease; InterPro IPR014833:IPR014832:IPR001584:IPR012337; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal; Integrase core domain.
  
     0.614
Krac_6376
TnsA endonuclease; InterPro IPR012337:IPR014833:IPR014832:IPR001584; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: TnsA endonuclease N terminal; Mu transposase, C-terminal; Integrase core domain.
  
     0.598
Krac_9573
TnsA endonuclease; InterProIPR012337:IPR014833:IPR014832:IPR001584:IPR 015378; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; Transposase-like Mu; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: Mu transposase, C-terminal; TnsA endonuclease N terminal; TnsA endonuclease C terminal; Integrase core domain.
  
     0.562
Krac_4220
KEGG: ava:Ava_3400 hypothetical protein; SPTR: B5HE35 Predicted protein; PFAM: Protein of unknown function (DUF2795).
 
     0.514
Krac_4222
Hypothetical protein; InterPro IPR017868; KEGG: ttr:Tter_2682 hypothetical protein; SPTR: D1CIJ9 Putative uncharacterized protein.
 
     0.509
Krac_2686
Protein of unknown function DUF1838; InterPro IPR014990; KEGG: hypothetical protein, conserved; PFAM: Protein of unknown function DUF1838; SPTR: B1W4Z3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1838).
  
     0.458
EFH89970.1
InterPro IPR004360; KEGG: gvi:gll2284 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Q7NI99 Gll2284 protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.456
EFH89190.1
InterPro IPR004360; KEGG: gvi:gll2284 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Q7NI99 Gll2284 protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.424
Krac_7181
InterPro IPR016181:IPR000182; KEGG: npu:Npun_R6335 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: B2IX73 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
     0.401
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.