STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4585Integrase catalytic region; COGs: COG3316 Transposase and inactivated derivatives; InterPro IPR012337:IPR001584; KEGG: bwe:BcerKBAB4_5621 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: B4WUJ6 Putative uncharacterized protein; PFAM: Transposase IS66 family. (271 aa)    
Predicted Functional Partners:
Krac_1761
Transposase; COGs: COG3316 Transposase and inactivated derivatives; KEGG: cdi:DIP1951 transposase; SPTR: B4WVB5 Integrase core domain protein.
  
     0.771
Krac_0525
Hypothetical protein; KEGG: amr:AM1_G0038 integrase, catalytic region; SPTR: B4WU12 Putative uncharacterized protein.
  
     0.762
Krac_4586
COGs: COG2355 Zn-dependent dipeptidase microsomal dipeptidase homolog; InterPro IPR008257; KEGG: scl:sce1419 hypothetical protein; PFAM: peptidase M19 renal dipeptidase; SPTR: Q08YK2 Sphingolipid ceramide N-deacylase; PFAM: Membrane dipeptidase (Peptidase family M19).
       0.551
Krac_4583
KEGG: pzu:PHZ_c2617 hydrolase, alpha/beta fold family; SPTR: Q1VYH1 Alpha/beta hydrolase fold protein.
       0.477
Krac_4584
Hypothetical protein.
       0.477
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.