STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5222Peptidoglycan-binding domain 1 protein; InterPro IPR002477; KEGG: xce:Xcel_0604 ErfK/YbiS/YcfS/YnhG family protein; PFAM: Peptidoglycan-binding domain 1 protein; SPTR: A5ZQ15 Putative uncharacterized protein; PFAM: Putative peptidoglycan binding domain. (231 aa)    
Predicted Functional Partners:
EFH90966.1
COGs: COG3409 Putative peptidoglycan-binding domain-containing protein; InterPro IPR002477; KEGG: hau:Haur_3686 hypothetical protein; PFAM: Peptidoglycan-binding domain 1 protein; SPTR: A9B6B1 Putative uncharacterized protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Putative peptidoglycan binding domain.
  
     0.750
Krac_6788
COGs: COG3409 Putative peptidoglycan-binding domain-containing protein; InterProIPR006311:IPR006619:IPR002502:IPR002477:IPR 017909; KEGG: ddr:Deide_2p01860 putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; muramoylpentapeptide carboxypeptidase; PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; Animal peptidoglycan recognition protein PGRP; SPTR: C1D367 Putative bifunctional protein, : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase; PFAM: P [...]
  
     0.675
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
 0.653
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
 0.653
tal-3
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
    
 0.653
Krac_5223
Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ppw:PputW619_3164 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: B1JA72 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain.
       0.449
Krac_9854
InterPro IPR002502:IPR002477:IPR017909:IPR006619; KEGG: cai:Caci_3182 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SPTR: C4RCK5 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
  
     0.431
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.