STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5253Hypothetical protein; KEGG: rrs:RoseRS_0999 methyl-accepting chemotaxis sensory transducer; SPTR: A5US05 Methyl-accepting chemotaxis sensory transducer. (163 aa)    
Predicted Functional Partners:
Krac_5254
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR016040; KEGG: dtu:Dtur_0058 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C3JMU1 Cholesterol dehydrogenase/isomerase; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase family.
       0.608
Krac_5252
Transposase IS605 OrfB; InterPro IPR010095; KEGG: adg:Adeg_0154 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; SPTR: B4B746 Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain.
       0.578
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.