STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5376GCN5-related N-acetyltransferase; COGs: COG4552 acetyltransferase involved in intracellular survival and related acetyltransferase; InterPro IPR000182:IPR016181; KEGG: bcl:ABC3964 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: C4RJS6 Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family. (388 aa)    
Predicted Functional Partners:
Krac_5377
Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: sro:Sros_4055 response regulator receiver protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C4ELT9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
       0.642
Krac_5378
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712:IPR018130; KEGG: sma:SAV_3133 two-component system sensor kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: Q82IK0 Putative two-component system sensor kinase; PFAM: Histidine kinase.
       0.556
Krac_3025
Glycoside hydrolase family 4; COGs: COG1486 Alpha-galactosidase/6-phospho-beta-glucosidase family 4 of glycosyl hydrolase; InterPro IPR015955:IPR016040:IPR001088; KEGG: gym:GYMC10_1370 glycoside hydrolase family 4; PFAM: glycoside hydrolase family 4; SPTR: C6D8V2 Glycoside hydrolase family 4; PFAM: Family 4 glycosyl hydrolase; Family 4 glycosyl hydrolase C-terminal domain.
  
     0.462
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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