STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5474Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307; KEGG: ttr:Tter_1938 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: D1CGH3 Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel. (249 aa)    
Predicted Functional Partners:
Krac_5475
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683; KEGG: rrs:RoseRS_3454 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; SPTR: A5UYV9 Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
 
  0.924
Krac_4320
Thiamine pyrophosphate protein central region; COGs: COG3962 Acetolactate synthase; InterPro IPR012001:IPR012000:IPR011766:IPR000399; KEGG: rxy:Rxyl_1718 thiamine pyrophosphate enzyme, central region; PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: Q1AVA0 Thiamine pyrophosphate enzyme, central region; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP [...]
 
 
 0.825
Krac_4767
Xylose isomerase domain protein TIM barrel; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR013022:IPR012307; KEGG: rmr:Rmar_0423 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: C0AAD7 Xylose isomerase domain-containing protein; PFAM: Xylose isomerase-like TIM barrel; Belongs to the hyi family.
 
  
  0.760
Krac_1177
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR016040; KEGG: rca:Rcas_4405 oxidoreductase domain-containing protein; PFAM: oxidoreductase domain protein; SPTR: A7NS75 Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
 
  0.743
Krac_8387
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: ttr:Tter_0446 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: D1CEL1 Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
  
 
  0.725
Krac_8523
Protein of unknown function DUF1037; COGs: COG4813 Trehalose utilization protein; InterPro IPR009381; KEGG: gyc:GYMC61_2950 protein of unknown function DUF1037; PFAM: protein of unknown function DUF1037; SPTR: A6CLV1 Trehalose utilization protein; PFAM: Trehalose utilisation.
 
     0.695
Krac_1178
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418:IPR013022; KEGG: chu:CHU_3129 endonuclease IV; PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; SPTR: A3XQG9 Putative uncharacterized protein; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
  
     0.689
Krac_5491
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: gka:GK1898 myo-inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Q5KYQ3 Myo-inositol 2-dehydrogenase; manually curated; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
  
 
  0.662
Krac_1179
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104:IPR016040; KEGG: rxy:Rxyl_0392 oxidoreductase-like protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: A6DPQ9 Oxidoreductase-like protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
  
 
  0.608
Krac_3526
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR013022:IPR012307:IPR011418; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; SPTR: Q8R8P7 Sugar phosphate isomerases/epimerases; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
  
     0.587
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.