STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5595Transcriptional regulator, TetR family; InterPro IPR001647:IPR012287:IPR009057; KEGG: sro:Sros_6450 putative transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C4EQ04 Transcriptional regulator, tetR family; PFAM: Bacterial regulatory proteins, tetR family. (195 aa)    
Predicted Functional Partners:
Krac_5017
InterPro IPR009057:IPR001647:IPR012287; KEGG: rxy:Rxyl_1049 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q1AX63 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.717
Krac_5594
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509; KEGG: pjd:Pjdr2_6126 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C6D7B8 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family.
 
     0.622
Krac_5006
InterPro IPR009057:IPR001647:IPR012287; KEGG: scl:sce6308 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A9GJQ5 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.514
Krac_5310
Transcriptional regulator, TetR family; InterPro IPR001647:IPR009057:IPR012287; KEGG: sro:Sros_5054 putative transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: C4EF77 Transcriptional regulator, COG1309; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.494
Krac_5592
Hypothetical protein.
       0.494
Krac_5593
Hypothetical protein.
       0.494
Krac_4202
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR016196; KEGG: sai:Saci_1521 membrane protein; PFAM: major facilitator superfamily MFS_1; SPTR: Q4J8P0 Membrane protein; PFAM: Sugar (and other) transporter.
  
     0.404
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.