STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Krac_5610Protein of unknown function DUF470; COGs: COG2898 conserved hypothetical protein; InterPro IPR007424:IPR007425:IPR007426; KEGG: ava:Ava_3199 hypothetical protein; PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; SPTR: B4VLC4 Putative uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156). (570 aa)    
Predicted Functional Partners:
lysS
COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR018149:IPR016027:IPR002313:IPR006195:IPR 004365:IPR004364:IPR012340; KEGG: pth:PTH_0263 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: A5D5Q4 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
 
 0.923
Krac_5608
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR003660:IPR003661:IPR003594:IPR 009082:IPR004358; KEGG: cag:Cagg_3501 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: B8G9I7 Sensor protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: heavy metal sensor kinase.
       0.610
Krac_5609
Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011991:IPR011006:IPR001867; KEGG: mta:Moth_1478 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: Q2RIF1 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.610
Krac_0330
COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cai:Caci_3408 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: B5GLT4 Putative uncharacterized protein; PFAM: Amino acid permease.
  
     0.480
Krac_1214
Conserved hypothetical protein; COGs: COG0531 Amino acid transporter; KEGG: ttr:Tter_2069 hypothetical protein; SPTR: D1CGV1 Putative uncharacterized protein; manually curated.
  
     0.439
Krac_0784
Protein of unknown function DUF470; COGs: COG2898 conserved hypothetical protein; InterPro IPR007424:IPR007426; KEGG: tro:trd_1014 family of unknown function (DUF470) family; PFAM: protein of unknown function DUF470; protein of unknown function DUF472; SPTR: B4AZW5 Putative uncharacterized protein; manually curated; PFAM: Uncharacterized conserved protein (DUF2156).
  
 
0.436
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.