STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5656YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR011008:IPR005545; KEGG: bja:bll6613 hypothetical protein; PFAM: YCII-related; SPTR: A6GSA1 Putative uncharacterized protein; manually curated; PFAM: YCII-related domain. (115 aa)    
Predicted Functional Partners:
Krac_5655
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR014284:IPR013325:IPR013324:IPR007627:IPR 013249:IPR000792; KEGG: saq:Sare_4650 RNA polymerase ECF-subfamily sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: A6FZL7 Probable sigma factor, includes region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.948
EFH90000.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR013325:IPR013324:IPR007627:IPR013249:IPR 014284:IPR000792; KEGG: sro:Sros_3462 ECF subfamily RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C4EMS5 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.778
Krac_1637
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR000838:IPR007627:IPR013249:IPR014284:IPR 013325:IPR013324; KEGG: stp:Strop_2313 sigma-70 region 2 domain-containing protein; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1WYY0 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.778
EFH89999.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR011008:IPR005545; KEGG: aau:AAur_3639 DGPF domain-containing protein; PFAM: YCII-related; SPTR: A1RAR5 Putative DGPF domain protein; PFAM: YCII-related domain.
  
     0.775
Krac_5689
InterPro IPR013538; KEGG: cpi:Cpin_5623 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: C7PAT5 Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.437
Krac_1911
InterPro IPR013538; KEGG: cpi:Cpin_5623 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase 1 family protein; SPTR: C7PAT5 Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein.
  
     0.427
Krac_5657
Transposase IS4 family protein; InterPro IPR014736:IPR014737:IPR012337:IPR002559; KEGG: gvi:gll0371 putative transposase; PFAM: transposase IS4 family protein; SPTR: Q7M7G3 Gll0371 protein; PFAM: Transposase DDE domain.
       0.409
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.