STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5739Transposase IS605 OrfB; InterPro IPR010095; KEGG: adg:Adeg_0154 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; SPTR: B4B746 Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain. (510 aa)    
Predicted Functional Partners:
Krac_7527
Transposase, IS605 OrfB family; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095; KEGG: dae:Dtox_0186 transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; SPTR: C8W2Y4 Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region.
  
     0.525
Krac_1171
InterPro IPR007087; KEGG: hypothetical protein LOC691900; SPTR: A8CVC6 Excinuclease ABC, A subunit (Fragment); manually curated.
  
     0.498
Krac_7170
Transposase IS605 OrfB; InterPro IPR001959:IPR010095; KEGG: chy:CHY_0599 ISChy9, transposase orfB; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: Q3AEH9 ISChy9, transposase orfB; PFAM: Putative transposase DNA-binding domain.
  
     0.497
Krac_5325
InterPro IPR007087; KEGG: hypothetical protein LOC691900; SPTR: A8CVC6 Excinuclease ABC, A subunit (Fragment); manually curated.
  
     0.493
Krac_0427
Transposase IS605 OrfB; InterPro IPR001959:IPR010095; KEGG: chy:CHY_0599 ISChy9, transposase orfB; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: Q3AEH9 ISChy9, transposase orfB; PFAM: Putative transposase DNA-binding domain.
  
     0.488
Krac_8370
Transposase IS605 OrfB; InterPro IPR010095; KEGG: chy:CHY_0599 ISChy9, transposase orfB; PFAM: transposase IS605 OrfB; SPTR: Q3AEH9 ISChy9, transposase orfB; PFAM: Putative transposase DNA-binding domain.
  
     0.485
Krac_1209
InterPro IPR007087; KEGG: hypothetical protein LOC691900; SPTR: A8CVC6 Excinuclease ABC, A subunit (Fragment); manually curated.
  
     0.484
Krac_9653
ATPase associated with various cellular activities AAA_5; InterPro IPR011704:IPR001959:IPR010095; KEGG: chy:CHY_0599 ISChy9, transposase orfB; PFAM: ATPase associated with various cellular activities AAA_5; putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Q3AEH9 ISChy9, transposase orfB; PFAM: Putative transposase DNA-binding domain.
  
     0.483
Krac_4126
Transposase IS605 OrfB; InterPro IPR001959:IPR010095; KEGG: chy:CHY_0599 ISChy9, transposase orfB; PFAM: transposase IS605 OrfB; putative transposase IS891/IS1136/IS1341 family; SPTR: Q3AEH9 ISChy9, transposase orfB.
  
     0.481
EFH88935.1
InterPro IPR000477; KEGG: syn:sll0371 hypothetical protein; SPTR: Q55755 Sll0371 protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase).
  
     0.480
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.