STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5915KEGG: bcv:Bcav_0319 hypothetical protein; SPTR: B7BC00 Putative uncharacterized protein. (454 aa)    
Predicted Functional Partners:
Krac_5916
FAD dependent oxidoreductase; InterPro IPR006076; KEGG: cpi:Cpin_3542 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: C4D4F2 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD dependent oxidoreductase.
 
     0.928
Krac_5912
Extracellular solute-binding protein family 1; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR006059; KEGG: bcv:Bcav_0322 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; SPTR: C5BWC8 Extracellular solute-binding protein family 1; PFAM: Bacterial extracellular solute-binding protein.
 
     0.564
Krac_1035
COGs: COG2942 N-acyl-D-glucosamine 2-epimerase; InterPro IPR010819:IPR012341:IPR008928; KEGG: bcv:Bcav_3354 N-acylglucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase; PRIAM: N-acylglucosamine 2-epimerase; SPTR: Q2BFI5 N-acyl-D-glucosamine 2-epimerase; PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase).
  
     0.549
Krac_4953
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR012338:IPR001466; KEGG: ote:Oter_0029 beta-lactamase; PFAM: beta-lactamase; SPTR: B1ZWJ7 Beta-lactamase; PFAM: Beta-lactamase.
  
     0.518
Krac_1031
KEGG: sth:STH1938 hypothetical protein; SPTR: Q67N20 Putative uncharacterized protein; PFAM: Neutral/alkaline non-lysosomal ceramidase.
  
     0.514
Krac_5914
COGs: COG0395 ABC-type sugar transport system permease component; InterPro IPR000515; KEGG: bcv:Bcav_0320 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C5BWC6 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.476
Krac_2552
Phytanoyl-CoA dioxygenase; COGs: COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin; InterPro IPR008775; KEGG: gym:GYMC10_2713 phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase; SPTR: C9Z0D9 Putative oxidoreductase; PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.472
Krac_5913
COGs: COG1175 ABC-type sugar transport systems permease components; InterPro IPR000515; KEGG: bcv:Bcav_0321 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C5BWC7 Binding-protein-dependent transport systems inner membrane component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.461
Krac_5921
Sulfatase; COGs: COG3119 Arylsulfatase A; InterPro IPR017849:IPR017850:IPR000917; KEGG: ttr:Tter_0440 sulfatase; PFAM: sulfatase; SPTR: D1CEK5 Sulfatase; PFAM: Sulfatase.
  
     0.455
Krac_3283
KEGG: pjd:Pjdr2_4038 hypothetical protein; SPTR: C6D5X3 Putative uncharacterized protein; PFAM: Heparinase II/III-like protein.
  
     0.454
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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