STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_5917Integrase catalytic region; COGs: COG3316 Transposase and inactivated derivatives; InterPro IPR001584; KEGG: gvi:gll2677 putative transposase; PFAM: Integrase catalytic region; SPTR: Q7NH60 Gll2677 protein; PFAM: Transposase IS66 family. (238 aa)    
Predicted Functional Partners:
Krac_5918
Hypothetical protein; KEGG: vfi:VF_A0570 D-alanyl-alanine synthetase A; SPTR: Q5E006 D-alanine--D-alanine ligase.
       0.452
Krac_5916
FAD dependent oxidoreductase; InterPro IPR006076; KEGG: cpi:Cpin_3542 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: C4D4F2 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD dependent oxidoreductase.
       0.443
Krac_5915
KEGG: bcv:Bcav_0319 hypothetical protein; SPTR: B7BC00 Putative uncharacterized protein.
       0.421
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.