STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_6004Hypothetical protein; KEGG: IR; insulin receptor; K04527 insulin receptor; SPTR: Q2LC18 Tyrosine-protein kinase receptor (Fragment). (62 aa)    
Predicted Functional Partners:
Krac_6005
Glucose-methanol-choline oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR000172:IPR012132:IPR007867; KEGG: ava:Ava_C0102 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; SPTR: Q3M1F2 Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase.
       0.485
Krac_6002
COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR012338:IPR001466; KEGG: fjo:Fjoh_0500 beta-lactamase; PFAM: beta-lactamase; SPTR: A5FMN5 Beta-lactamase peptidase family S12; PFAM: Beta-lactamase.
       0.424
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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