STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_6065KaiA binding protein; COGs: COG0467 RecA-superfamily ATPase implicated in signal transduction; InterPro IPR015140:IPR003593:IPR004504:IPR010624; KEGG: bgl:bglu_2g18700 RAD553; PFAM: KaiA binding; SMART: AAA ATPase; SPTR: C5AJW6 Rad553; PFAM: KaiC. (529 aa)    
Predicted Functional Partners:
Krac_6064
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR011006:IPR001789; KEGG: mxa:MXAN_4432 putative response regulator/sensor histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1D420 Sensor protein; PFAM: Response regulator receiver domain.
       0.727
EFH89321.1
Putative PAS/PAC sensor protein; InterPro IPR000014:IPR000700:IPR001610:IPR013767; KEGG: pol:Bpro_3508 putative PAS/PAC sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: A3JW84 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
 
   0.641
Krac_6283
Putative PAS/PAC sensor protein; InterProIPR013656:IPR013767:IPR000014:IPR001610:IPR 000700; KEGG: pol:Bpro_3508 putative PAS/PAC sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: A3JW84 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
 
   0.571
Krac_6968
COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 009082:IPR004358:IPR005467:IPR000700:IPR013656:IPR013655; KEGG: rhi:NGR_b16830 two component sensor-kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PF [...]
 
 
 
 0.547
EFH90518.1
COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR005467:IPR000014:IPR 000700:IPR013767:IPR013656:IPR013655:IPR003661:IPR001610:I PR004358; KEGG: rlg:Rleg_6856 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal tra [...]
 
 
 
 0.544
Krac_3749
COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR004358:IPR001610:IPR003661:IPR 003594:IPR005467:IPR000700:IPR009082:IPR013767:IPR013656:I PR013655; KEGG: rhi:NGR_b16830 two component sensor-kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal transduction histidine kin [...]
 
 
 
 0.543
Krac_8379
Putative PAS/PAC sensor protein; COGs: COG2202 FOG: PAS/PAC domain; InterProIPR000014:IPR013767:IPR013656:IPR013655:IPR 000700:IPR001610; KEGG: rlg:Rleg_6854 PAS/PAC sensor signal transduction histidine kinase; PFAM: PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: B9YP78 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box.
 
 
 
 0.540
Krac_9496
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR013767:IPR013656:IPR 013655:IPR003661:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: rlg:Rleg_6856 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal tra [...]
 
 
 
 0.538
Krac_1482
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR013656:IPR013655:IPR003661:IPR 003594:IPR005467:IPR000014:IPR000700:IPR009082:IPR004358:I PR001610; KEGG: rlg:Rleg_6856 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C8SDN7 PAS/PAC sensor signal tra [...]
 
 
 
 0.536
Krac_9409
COGs: COG5002 Signal transduction histidine kinase; InterProIPR003594:IPR009082:IPR013767:IPR013656:IPR 013655:IPR003661:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: cyc:PCC7424_4990 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: B7KFL8 Sensor protein; TIGRFAM: PAS sensor [...]
 
 
 
 0.534
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.