STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_6099Hypothetical protein; KEGG: WFIKKN1; WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1; SPTR: D1BIY4 Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase. (105 aa)    
Predicted Functional Partners:
Krac_6100
Hypothetical protein; KEGG: cyb:CYB_1107 exonuclease SbcC; SPTR: Q2JMF7 Exonuclease SbcC.
       0.528
Krac_6096
KEGG: hypothetical protein; SPTR: A2QZU5 Similarity to hypothetical protein SCF91.02c - Streptomyces coelicolor.
       0.471
Krac_6097
Hypothetical protein; KEGG: GF17463 gene product from transcript GF17463-RA; SPTR: B3LVZ8 GF17463.
       0.471
Krac_6098
KEGG: hypothetical protein; SPTR: B2AZR6 Predicted CDS Pa_3_2670.
       0.471
csrA-5
Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.447
Krac_6095
KEGG: hypothetical protein; SPTR: A7F6J6 Predicted protein.
       0.447
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.