STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Krac_6327Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterPro IPR019888:IPR000485:IPR011991; KEGG: gvi:glr2681 transcription regulator AsnC; SMART: Transcription regulator, AsnC-type; SPTR: Q7NH56 AsnC family transcriptional regulatory protein; PFAM: MarR family. (87 aa)    
Predicted Functional Partners:
Krac_6794
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR002869:IPR009014:IPR019752:IPR015941:IPR 002880; KEGG: chl:Chy400_1038 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; SPTR: B9LLV4 Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase.
    
  0.715
Krac_5281
COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterProIPR015890:IPR001544:IPR018300:IPR005801:IPR 019999:IPR005802; KEGG: cts:Ctha_2549 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; aminotransferase class IV; SPTR: B3QY32 Para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Aminotransferase class IV; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.
     
 0.676
EFH89518.1
COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR008988:IPR004408:IPR004143:IPR003142; KEGG: deb:DehaBAV1_0768 biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; SPTR: Q3ZXL2 Biotin-acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
   
 
 0.641
Krac_6328
KEGG: tai:Taci_0270 transcriptional regulator, AsnC family; SPTR: D1B8A4 Transcriptional regulator, AsnC family.
       0.628
Krac_6326
Phenazine biosynthesis protein PhzF family; COGs: COG0384 epimerase PhzC/PhzF homolog; InterPro IPR003719; KEGG: ara:Arad_14200 phenazine biosynthetic protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; SPTR: B9JPI5 Phenazine biosynthetic protein; TIGRFAM: phenazine biosynthesis protein PhzF family; manually curated; PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family.
       0.405
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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