STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_6423Transcriptional regulator, TetR family; InterPro IPR009057:IPR011075:IPR001647:IPR012287; KEGG: dge:Dgeo_0788 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q1J094 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family. (207 aa)    
Predicted Functional Partners:
Krac_6424
Hypothetical protein.
       0.547
Krac_6425
KEGG: pmm:PMM0497 primosomal protein N' (replication factor Y); SPTR: Q6JFY3 Gag polyprotein (Fragment).
       0.527
Krac_4170
Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR018309:IPR011991; KEGG: gym:GYMC10_2339 transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like; transcriptional regulator PadR family protein; SPTR: A3TJN1 Putative PadR-like family transcriptional regulator; manually curated; PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term.
  
     0.503
Krac_6421
KEGG: fal:FRAAL1876 hypothetical protein; SPTR: Q0RPK5 Putative uncharacterized protein.
       0.473
Krac_6422
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: bcv:Bcav_0361 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C5BWG7 ABC transporter related; PFAM: ABC transporter.
       0.473
Krac_6420
InterPro IPR000568; KEGG: nml:Namu_1625 hypothetical protein; SPTR: C8XFQ5 Putative uncharacterized protein.
       0.449
EFH90537.1
Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR011991:IPR005149; KEGG: bld:BLi00353 hypothetical protein; PFAM: transcriptional regulator PadR family protein; SPTR: C9D3S1 Transcriptional regulator; PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term.
  
     0.443
Krac_9341
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterProIPR012287:IPR015893:IPR011075:IPR009057:IPR 001647; KEGG: azc:AZC_4590 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A8HZJ5 Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
  
     0.432
Krac_6757
Transcriptional regulator, TetR family; InterProIPR009057:IPR011075:IPR001647:IPR012287:IPR 015893; KEGG: hau:Haur_1014 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: A9AZB6 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.420
Krac_8865
Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR011991:IPR005149:IPR018309; KEGG: rca:Rcas_2179 PadR-like family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; Transcriptional regulator PadR-like; SPTR: A7NL90 Transcriptional regulator, PadR-like family; PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term.
  
     0.408
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.