STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAGlycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (492 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.996
Krac_2832
Alpha amylase catalytic region; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR017853:IPR006047:IPR013781:IPR006589; KEGG: npu:Npun_R6403 glycoside hydrolase family protein; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B4VXE6 Alpha amylase, catalytic domain subfamily, putative; PFAM: Alpha amylase, catalytic domain.
 
 
 0.975
Krac_7793
COGs: COG0058 Glucan phosphorylase; InterPro IPR000811:IPR011834; KEGG: hau:Haur_1148 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: Phosphorylase; SPTR: A9B0S6 Alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases.
 
 
 0.972
Krac_3469
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR013781:IPR006589:IPR017853:IPR006047; KEGG: cyc:PCC7424_3146 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B7KCJ7 Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
 
 
 0.914
EFH88554.1
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterProIPR006047:IPR017853:IPR013781:IPR013780:IPR 006589; KEGG: rca:Rcas_3863 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: A7NQQ3 Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
 
 0.910
Krac_4243
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterProIPR006047:IPR006048:IPR013781:IPR013780:IPR 017853:IPR006589; KEGG: hau:Haur_2969 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; SPTR: Q60051 Alpha-amylase; PFAM: Alpha amylase, catalytic domain.
 
 
 0.890
EFH89515.1
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterProIPR011004:IPR016055:IPR017441:IPR005835:IPR 001451:IPR005844:IPR005845; KEGG: cag:Cagg_3774 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: B8GB10 Nucleotidyl transferase; P [...]
  
 
 0.802
Krac_8175
Putative serine protein kinase, PrkA; COGs: COG2766 Putative Ser protein kinase; InterPro IPR013153:IPR010650:IPR016230; KEGG: sth:STH788 serine protein kinase; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein; SPTR: D1CA37 Putative serine protein kinase, PrkA; PFAM: PrkA AAA domain; PrkA serine protein kinase C-terminal domain.
   
    0.777
Krac_8437
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mno:Mnod_3023 polysaccharide deacetylase; PFAM: glycosyl transferase family 2; SPTR: B0VJ62 Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
    
 0.758
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
  
 0.683
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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