STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_6789Hypothetical protein. (34 aa)    
Predicted Functional Partners:
Krac_6790
Hydrolase; InterPro IPR000998; KEGG: sma:SAV_1224 hydrolase; SPTR: Q82NR7 Putative hydrolase; PFAM: MAM domain; Immune inhibitor A peptidase M6.
       0.623
Krac_6788
COGs: COG3409 Putative peptidoglycan-binding domain-containing protein; InterProIPR006311:IPR006619:IPR002502:IPR002477:IPR 017909; KEGG: ddr:Deide_2p01860 putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; muramoylpentapeptide carboxypeptidase; PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; Animal peptidoglycan recognition protein PGRP; SPTR: C1D367 Putative bifunctional protein, : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase; PFAM: P [...]
       0.448
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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