STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_7075Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061:IPR015358; KEGG: cai:Caci_4563 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: Q1WEJ6 Resistance related regulator; PFAM: MerR family regulatory protein; MerR, DNA binding. (151 aa)    
Predicted Functional Partners:
EFH90465.1
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR015358; KEGG: pjd:Pjdr2_3692 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C6D495 Transcriptional regulator, MerR family; PFAM: MerR, DNA binding; MerR family regulatory protein.
  
     0.767
EFH89846.1
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR015358; KEGG: pjd:Pjdr2_1468 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C6CWS9 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding.
  
     0.728
Krac_1257
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR015358:IPR009061; KEGG: bbe:BBR47_28470 putative transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; SMART: regulatory protein MerR; SPTR: C0ZDG5 Putative transcriptional regulator; PFAM: MerR, DNA binding; MerR family regulatory protein.
  
     0.727
Krac_7074
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002347:IPR002198; KEGG: fal:FRAAL3850 putative short chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Q0RJ22 Putative short chain dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.723
Krac_1994
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061; KEGG: bbe:BBR47_30580 probable transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C0ZE26 Probable transcriptional regulator; PFAM: MerR family regulatory protein.
  
     0.677
EFH90591.1
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR009061:IPR000551:IPR008396; KEGG: sus:Acid_2366 MerR family transcriptional regulator; PFAM: regulatory protein MerR; Albicidin resistance; SMART: regulatory protein MerR; SPTR: D1C932 Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein; MerR, DNA binding; TipAS antibiotic-recognition domain.
  
     0.669
Krac_0754
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061:IPR008396; KEGG: aba:Acid345_0339 MerR family transcriptional regulator; PFAM: regulatory protein MerR; Albicidin resistance; SMART: regulatory protein MerR; SPTR: D1C932 Transcriptional regulator, MerR family; PFAM: MerR, DNA binding; MerR family regulatory protein; TipAS antibiotic-recognition domain.
  
     0.512
Krac_7076
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: bba:Bd3360 transcriptional regulatory protein ZraR; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q1JVH2 Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain.
       0.512
Krac_9408
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789; KEGG: rmr:Rmar_0513 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: D0MEW5 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain.
    
 0.506
Krac_5318
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR010499:IPR009061:IPR011256; KEGG: ana:all0345 transcriptional regulator; PFAM: regulatory protein MerR; transcription activator effector binding; SMART: regulatory protein MerR; SPTR: Q8YZW0 Transcriptional regulator; PFAM: MerR family regulatory protein; Bacterial transcription activator, effector binding domain.
  
     0.496
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.