STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_7139ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR017871:IPR003439; KEGG: fre:Franean1_3995 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A8L5M4 ABC transporter related; PFAM: ABC transporter. (292 aa)    
Predicted Functional Partners:
Krac_7137
KEGG: sro:Sros_1169 hypothetical protein; SPTR: Q2YZY4 Putative uncharacterized protein.
  
  0.781
Krac_7138
KEGG: sro:Sros_1170 hypothetical protein; SPTR: C4E5V1 Putative uncharacterized protein.
       0.675
Krac_7135
KEGG: fre:Franean1_3992 putative transmembrane anti-sigma factor; SPTR: A8L5M1 Putative transmembrane anti-sigma factor.
       0.471
Krac_7134
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR007627:IPR007630:IPR 014284; KEGG: rpa:RPA1819 RNA polymerase sigma factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: Q6N8T4 RNA polymerase ECF-type sigma factor, possible FecI; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.468
Krac_7140
Resolvase domain protein; COGs: COG2452 site-specific integrase-resolvase; InterPro IPR006119; KEGG: mar:MAE_62920 putative resolvase; PFAM: Resolvase domain; SPTR: B0JLB5 Putative resolvase; PFAM: Resolvase, N terminal domain.
       0.437
Krac_7141
Transposase; KEGG: mar:MAE_45770 transposase; SPTR: A0ZE03 Putative uncharacterized protein; PFAM: Probable transposase.
       0.437
Krac_7142
Transposase, IS605 OrfB family; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095; KEGG: ana:alr7153 hypothetical protein; PFAM: transposase IS605 OrfB; SPTR: Q8YKY5 Alr7153 protein; TIGRFAM: transposase, IS605 OrfB family; PFAM: Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region.
       0.437
Krac_8135
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: bcv:Bcav_1400 ABC transporter related; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: C4DR72 ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
    
  0.410
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.