STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_7205KEGG: sti:Sthe_2375 hypothetical protein; SPTR: D1C7E9 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1006). (363 aa)    
Predicted Functional Partners:
Krac_7206
Transcriptional regulator, TetR family; InterPro IPR012287:IPR001647:IPR009057:IPR011075; KEGG: rop:ROP_34140 putative TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q0SAL8 Transcriptional regulator, TetR family protein; PFAM: Bacterial regulatory proteins, tetR family.
       0.675
Krac_2083
KEGG: pjd:Pjdr2_5969 hypothetical protein; SPTR: C6D670 Putative uncharacterized protein.
  
     0.537
Krac_7204
Hypothetical protein; KEGG: sen:SACE_3224 non-ribosomal peptide synthetase modules; SPTR: A4FEM4 Non-ribosomal peptide synthetase modules.
       0.493
metE
5-methyltetrahydropteroyltriglutamate/homocystei neS-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
       0.470
Krac_6899
Protein of unknown function DUF1801; COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: art:Arth_0591 hypothetical protein; PFAM: Domain of unknown function DUF1801; SPTR: A0JSH0 Putative uncharacterized protein; PFAM: Domain of unknown function (DU1801).
  
     0.429
Krac_7713
Bifunctional deaminase-reductase domain protein; COGs: COG0262 Dihydrofolate reductase; InterPro IPR002734; KEGG: saq:Sare_2943 deaminase-reductase domain-containing protein; PFAM: bifunctional deaminase-reductase domain protein; SPTR: C4DS62 Dihydrofolate reductase; PFAM: RibD C-terminal domain.
  
    0.402
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.