STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_7566KEGG: rca:Rcas_1731 hypothetical protein; SPTR: Q08UF7 Putative uncharacterized protein. (469 aa)    
Predicted Functional Partners:
EFH90936.1
GAF sensor signal transduction histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterProIPR005467:IPR003018:IPR003661:IPR003594:IPR 004358:IPR009082; KEGG: gur:Gura_2062 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; SPTR: A5G384 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain.
  
 
  0.845
EFH90424.1
Hypothetical protein; InterPro IPR001305; KEGG: fps:FP2172 hypothetical protein; SPTR: A6H1K9 Putative uncharacterized protein.
  
 
  0.827
EFH90727.1
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR001440:IPR011717:IPR 013105:IPR011990; KEGG: rca:Rcas_3987 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: A7NR24 Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat.
 
  
 0.827
EFH90415.1
PASTA domain containing protein; InterPro IPR005543; KEGG: hau:Haur_3144 hypothetical protein; PFAM: PASTA domain containing protein; SPTR: A9B5Y8 Putative uncharacterized protein; PFAM: Bacterial membrane flanked domain; PASTA domain.
  
 
   0.823
Krac_7565
COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: abb:ABBFA_000647 protein PilG; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: D0SLH3 Twitching motility protein; PFAM: Response regulator receiver domain.
 
     0.806
Krac_2296
Amino acid permease-associated region; COGs: COG1113 Gamma-aminobutyrate permease and related permease; InterPro IPR004841:IPR002293; KEGG: mva:Mvan_2217 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: A1T781 Amino acid permease-associated region; PFAM: Amino acid permease.
  
 
   0.784
Krac_6940
COGs: COG0531 Amino acid transporter; InterPro IPR000408:IPR019775:IPR002293:IPR004841; KEGG: mjl:Mjls_1980 amino acid permease-associated region; PFAM: amino acid permease-associated region; SPTR: Q1BAH6 Amino acid permease-associated region.
  
 
   0.784
Krac_9108
InterPro IPR001254:IPR009003; KEGG: nca:Noca_2395 peptidase S1 and S6, chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; SPTR: A1SJB5 Peptidase S1 and S6, chymotrypsin/Hap; PFAM: Trypsin.
  
 
  0.781
EFH89326.1
InterPro IPR004155:IPR011989:IPR016024; KEGG: ana:alr1903 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; SPTR: Q8YVS1 Alr1903 protein.
 
 
   0.780
Krac_8056
Polysaccharide deacetylase; InterPro IPR002509:IPR011330; KEGG: sti:Sthe_1132 glycosyl transferase group 1; PFAM: polysaccharide deacetylase; SPTR: D1C2V1 Glycosyl transferase group 1; PFAM: Polysaccharide deacetylase.
 
 
   0.778
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.