STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8020COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR012338:IPR001967:IPR018044; KEGG: mta:Moth_1357 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; SPTR: C0GDY6 Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (633 aa)    
Predicted Functional Partners:
EFH89925.1
COGs: COG3409 Putative peptidoglycan-binding domain-containing protein; InterPro IPR017853:IPR002477:IPR015020; KEGG: dhd:Dhaf_2934 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan-binding domain 1 protein; Domain of unknown function DUF1906; SPTR: A3TI13 Putative uncharacterized protein; PFAM: Putative peptidoglycan binding domain; Domain of unknown function (DUF1906).
 
 
 0.729
Krac_9854
InterPro IPR002502:IPR002477:IPR017909:IPR006619; KEGG: cai:Caci_3182 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2; SPTR: C4RCK5 N-acetylmuramoyl-L-alanine amidase family 2; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
  
 
 0.636
Krac_8021
Protein of unknown function DUF1727; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013221:IPR013564; KEGG: sth:STH1066 UDP-N-acetylmuramyl tripeptide synthase; PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; SPTR: Q67QJ2 UDP-N-acetylmuramyl tripeptide synthase; PFAM: Domain of unknown function (DUF1727); Mur ligase middle domain.
  
  
 0.542
EFH89473.1
CHAP domain containing protein; COGs: COG3942 Surface antigen; InterPro IPR007921; KEGG: saa:SAUSA300_pUSA0316 transfer complex protein TraG; PFAM: CHAP domain containing protein; SPTR: C4WCV1 N-acetylmuramoyl-L-alanine amidase; PFAM: CHAP domain.
     
 0.541
Krac_8022
COGs: COG3442 glutamine amidotransferase; InterPro IPR011698:IPR017929; KEGG: mta:Moth_0995 CobB/CobQ-like glutamine amidotransferase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Q2RJS9 CobB/CobQ-like glutamine amidotransferase; PFAM: CobB/CobQ-like glutamine amidotransferase domain.
       0.523
Krac_8648
COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR013437:IPR001182; KEGG: sti:Sthe_1992 cell division protein FtsW; PFAM: cell cycle protein; SPTR: D1C5A5 Cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.476
EFH90480.1
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: sti:Sthe_1163 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; SPTR: D1C2Y2 Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain.
 
 
 0.473
Krac_9185
Glycosyl transferase family 51; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460:IPR012338; KEGG: rrs:RoseRS_1948 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: A5UUN3 Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
  
 
 0.467
Krac_6047
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: sti:Sthe_1163 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; SPTR: D1C2Y2 Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain.
 
 
 0.459
Krac_8650
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR012338:IPR005311:IPR001460; KEGG: ttr:Tter_1614 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: D1CCK5 Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
 
 
 0.457
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.