STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8077Hypothetical protein; KEGG: llm:llmg_1422 penicillin acylase; SPTR: D0BMY4 Non-specific serine/threonine protein kinase. (241 aa)    
Predicted Functional Partners:
Krac_8078
Transcriptional regulator, XRE family; InterProIPR001387:IPR002182:IPR001440:IPR010982:IPR 019734:IPR013026:IPR011990:IPR000767; KEGG: rrs:RoseRS_3131 NB-ARC domain-containing protein; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; TPR repeat-containing protein; SMART: helix-turn-helix domain protein; Tetratricopeptide repeat; SPTR: A5UXZ0 NB-ARC domain protein; PFAM: Helix-turn-helix; NB-ARC domain.
       0.530
Krac_8079
Hypothetical protein; KEGG: GE15708 gene product from transcript GE15708-RA; SPTR: B4Q131 GE15708.
       0.530
Krac_8076
KEGG: hypothetical protein; K00027 malate dehydrogenase (oxaloacetate-decarboxylating); SPTR: P17834 Fimbrial assembly protein, serogroup I.
       0.409
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.