STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8083COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ana:alr5307 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: Q8YLJ1 Alr5307 protein; PFAM: Glycosyl transferases group 1. (390 aa)    
Predicted Functional Partners:
Krac_8993
Amylo-alpha-16-glucosidase; COGs: COG3408 Glycogen debranching protein; InterPro IPR010401:IPR008928; KEGG: cya:CYA_0269 glycogen debranching enzyme family protein; PFAM: Amylo-alpha-16-glucosidase; SPTR: Q2JXJ2 Glycogen debranching enzyme family protein; PFAM: Amylo-alpha-1,6-glucosidase.
  0.833
EFH89515.1
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterProIPR011004:IPR016055:IPR017441:IPR005835:IPR 001451:IPR005844:IPR005845; KEGG: cag:Cagg_3774 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: B8GB10 Nucleotidyl transferase; P [...]
  
 0.811
EFH89617.1
TPR repeat-containing protein; InterPro IPR019734:IPR013026:IPR001440:IPR011990; KEGG: TPR Domain containing protein; PFAM: TPR repeat-containing protein; SPTR: A0YWU0 TPR repeat protein; PFAM: Tetratricopeptide repeat.
    
 0.645
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.613
Krac_2832
Alpha amylase catalytic region; COGs: COG0296 1 4-alpha-glucan branching enzyme; InterPro IPR017853:IPR006047:IPR013781:IPR006589; KEGG: npu:Npun_R6403 glycoside hydrolase family protein; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: B4VXE6 Alpha amylase, catalytic domain subfamily, putative; PFAM: Alpha amylase, catalytic domain.
   
 0.613
Krac_7829
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR016040:IPR003362:IPR017475; KEGG: tro:trd_A0816 undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: B9L4V2 Undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransfer [...]
 
  
 0.604
Krac_6979
Undecaprenyl-phosphate galactose phosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: dth:DICTH_0737 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: B5YDJ8 Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase.
 
  
 0.598
Krac_4841
Peptidase S15; COGs: COG1073 Hydrolase of the alpha/beta superfamily; KEGG: gym:GYMC10_0246 peptidase S15; SPTR: B8I0W2 Putative uncharacterized protein; PFAM: Prolyl oligopeptidase family; Putative lysophospholipase.
    
 
 0.544
Krac_8437
COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: mno:Mnod_3023 polysaccharide deacetylase; PFAM: glycosyl transferase family 2; SPTR: B0VJ62 Putative uncharacterized protein; PFAM: Glycosyl transferase family 2.
  
 
 0.541
Krac_0805
ATP-dependent DNA helicase, RecQ family; COGs: COG0514 Superfamily II DNA helicase; InterProIPR019734:IPR013026:IPR014021:IPR001650:IPR 014016:IPR014017:IPR011990:IPR012337:IPR006055:IPR014001:I PR001440:IPR013520:IPR011545:IPR000212:IPR018329; KEGG: cbt:CLH_2071 ATP-dependent DNA helicase RecQ; PFAM: DEAD/DEAH box helicase domain protein; Exonuclease RNase T and DNA polymerase III; TPR repeat-containing protein; helicase domain protein; UvrD/REP helicase; SMART: helicase domain protein; DEAD-like helicase; Exonuclease; Tetratricopeptide repeat; SPTR: B2V462 ATP-dependent DNA helicase [...]
    
 
 0.540
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.