STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8207Biphenyl-2,3-diol 1,2-dioxygenase; COGs: COG2514 ring-cleavage extradiol dioxygenase; InterPro IPR004360; KEGG: rha:RHA1_ro00536 extradiol dioxygenase, type I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: Biphenyl-2,3-diol 1,2-dioxygenase; SPTR: O69351 2,3-dihydroxybiphenyl 1,2-dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. (199 aa)    
Predicted Functional Partners:
Krac_9091
KEGG: rlg:Rleg_2678 phytanoyl-CoA dioxygenase; SPTR: C6B3Z1 Phytanoyl-CoA dioxygenase; PFAM: Phytanoyl-CoA dioxygenase (PhyH).
  
     0.650
Krac_4181
Phosphogluconate dehydrogenase, NAD-binding, putative; COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterProIPR006115:IPR015814:IPR016040:IPR013328:IPR 008927; KEGG: ava:Ava_4075 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; 6-phosphogluconate dehydrogenase NAD-binding; SPTR: Q3M5Q7 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: Domain of unknown function (DUF1932); NAD binding domain of 6-phosphogluconate dehydrogenase.
  
     0.627
Krac_9381
Cell wall assembly/cell proliferation coordinating protein, KNR4; COGs: COG4282 Protein involved in beta-1 3-glucan synthesis; InterPro IPR018958; KEGG: pct:PC1_3491 hypothetical protein; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR: C6DE71 Putative uncharacterized protein; PFAM: SMI1 / KNR4 family.
  
     0.554
Krac_8208
KEGG: hypothetical protein; SPTR: D0MSX0 Putative uncharacterized protein.
       0.538
Krac_8206
KEGG: sco:SCO2732 integral-membrane protein; SPTR: Q9RDJ3 Putative integral-membrane protein.
       0.515
Krac_4860
Monooxygenase FAD-binding; COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR003042:IPR002938; KEGG: hypothetical protein; PFAM: monooxygenase FAD-binding; SPTR: B3G4N0 FAD-binding monooxygenase-like protein; PFAM: FAD binding domain.
  
  
  0.487
Krac_2026
Cupin 2 conserved barrel domain protein; COGs: COG4101 mannose-6-phosphate isomerase; InterPro IPR013096:IPR014710:IPR011051; KEGG: rso:RSc0220 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Q8Y2W2 Probable mannose-6-phosphate isomerase protein; PFAM: Cupin domain.
  
     0.486
Krac_4417
COGs: COG2159 metal-dependent hydrolase of the TIM-barrel fold; InterPro IPR006992; KEGG: bur:Bcep18194_A4912 amidohydrolase 2; PFAM: amidohydrolase 2; SPTR: C4RCC1 Amidohydrolase; PFAM: Amidohydrolase.
 
  
  0.484
Krac_7251
GCN5-related N-acetyltransferase; InterPro IPR016181:IPR000182; KEGG: beta-N-acetylglucosaminidase; K01207 beta-N-acetylhexosaminidase; PFAM: GCN5-related N-acetyltransferase; SPTR: B0XXA8 Beta-N-acetylglucosaminidase, putative; PFAM: Acetyltransferase (GNAT) family.
  
    0.482
EFH89065.1
Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR011051:IPR014710; KEGG: sco:SCO4483 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Q9KYP9 Putative uncharacterized protein SCO4483; PFAM: Cupin domain.
  
     0.476
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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