STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8272Hypothetical protein; InterPro IPR014756; KEGG: similar to C6orf205 protein; SPTR: A9WSP9 Putative peptidase. (305 aa)    
Predicted Functional Partners:
Krac_8611
KEGG: tro:trd_0263 hypothetical protein; SPTR: B9KXS5 Putative uncharacterized protein.
   
 0.987
Krac_8626
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.960
Krac_2195
COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR005805:IPR011637; KEGG: ace:Acel_0145 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; DoxX family protein; SPTR: A0LR60 Rieske (2Fe-2S) domain protein; PFAM: DoxX; Rieske [2Fe-2S] domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
    
  0.669
Krac_9109
COGs: COG0723 Rieske Fe-S protein; InterPro IPR007301:IPR017941:IPR005805; KEGG: ace:Acel_0145 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; TQO small subunit DoxD; SPTR: A0LR60 Rieske (2Fe-2S) domain protein; PFAM: TQO small subunit DoxD; Rieske [2Fe-2S] domain.
    
  0.669
Krac_8623
Cytochrome-c oxidase; COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: mca:MCA0883 cytochrome c oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; PRIAM: Cytochrome-c oxidase; SPTR: Q60AH0 Cytochrome c oxidase, subunit III; PFAM: Cytochrome c oxidase subunit III.
  
 
 0.611
Krac_1023
COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR006179:IPR008334; KEGG: bbe:BBR47_48360 putative nucleotidase; SPTR: C0ZKY6 Putative nucleotidase; PFAM: 5'-nucleotidase, C-terminal domain; Belongs to the 5'-nucleotidase family.
    
 0.600
Krac_6665
COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941:IPR017909:IPR005805:IPR006311; KEGG: hau:Haur_4253 Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: A9AXG5 Rieske (2Fe-2S) domain protein; PFAM: Rieske [2Fe-2S] domain.
    
 0.598
Krac_8271
RNA methyltransferase, TrmH family, group 3; COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537:IPR004441; KEGG: sth:STH3115 rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: C6J674 RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH [...]
       0.531
Krac_6666
Hypothetical protein; InterPro IPR005798; KEGG: sus:Acid_4386 hypothetical protein; SPTR: Q1PYR4 Hypothetical bc1 protein (Putative UQ:cyt c oxidpoeductase); PFAM: Cytochrome b(C-terminal)/b6/petD.
    
 0.521
Krac_6667
Cytochrome b/b6 domain protein; COGs: COG1290 Cytochrome b subunit of the bc complex; InterPro IPR016174:IPR005797:IPR016175; KEGG: sth:STH3148 menaquinol-cytochrome c reductase; PFAM: Cytochrome b/b6 domain; SPTR: Q67JM0 Menaquinol-cytochrome C reductase; PFAM: Cytochrome b(N-terminal)/b6/petB.
    
 0.521
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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