STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8373SMF family protein; COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sti:Sthe_0385 DNA protecting protein DprA; PFAM: SMF family protein; SPTR: D1C7J1 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A. (176 aa)    
Predicted Functional Partners:
Krac_7954
ComEC/Rec2-related protein; InterPro IPR004477; KEGG: deh:cbdb_A29 DNA internalization-related competence protein,ComEC; PFAM: ComEC/Rec2-related protein; SPTR: D0Y8P6 DNA internalization-related competence protein ComEC/Rec2; manually curated; PFAM: Competence protein.
 
  
 0.808
EFH89525.1
COGs: COG1040 amidophosphoribosyltransferase; KEGG: sti:Sthe_0523 phosphoribosyltransferase; SPTR: A3UGI5 Phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein.
 
 
 0.775
Krac_2679
Hypothetical protein; KEGG: mtp:Mthe_1531 integral membrane sensor signal transduction histidine kinase; SPTR: A0B9B5 Sensor protein.
   
    0.706
EFH88828.1
Magnesium chelatase ChlI subunit; COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523; KEGG: tel:tlr0594 competence protein ComM; PFAM: magnesium chelatase ChlI subunit; SPTR: Q8DLA2 Tlr0594 protein; PFAM: Magnesium chelatase, subunit ChlI.
 
 
 0.681
EFH89522.1
Hypothetical protein; KEGG: afw:Anae109_0258 phosphoribosyltransferase; SPTR: A7H6Y0 Phosphoribosyltransferase.
  
 
 0.661
EFH90325.1
InterPro IPR007831; KEGG: pjd:Pjdr2_2098 type II secretion system protein E; PFAM: General secretory system II protein E domain protein; SPTR: A6C1Z3 Type IV fimbrial assembly protein PilB; PFAM: GSPII_E N-terminal domain.
  
  
 0.648
Krac_9299
Diguanylate cyclase; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: app:CAP2UW1_1904 response regulator receiver modulated diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: D0D8N0 Response regulator PleD (Stalked cell differentiation-controlling protein); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
    0.619
Krac_8372
KEGG: hau:Haur_1905 hypothetical protein; SPTR: A9AUM1 Putative uncharacterized protein.
 
     0.616
EFH89165.1
COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: rca:Rcas_0037 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: A7NFF4 UPF0758 protein Rcas_0037; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.
  
  
 0.555
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.536
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.