STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8584NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: cth:Cthe_2413 NLP/P60; PFAM: NLP/P60 protein; SPTR: C7HDD5 NLP/P60 protein; PFAM: NlpC/P60 family; Bacterial SH3 domain. (286 aa)    
Predicted Functional Partners:
Krac_8585
COGs: COG2367 Beta-lactamase class A; InterPro IPR000871:IPR012338; KEGG: rme:Rmet_4436 beta-lactamase class A-like protein; SPTR: Q1LEX5 Beta-lactamase class A-like protein; PFAM: D-alanyl-D-alanine carboxypeptidase.
 
    0.822
Krac_8583
COGs: COG0506 Proline dehydrogenase; InterPro IPR008219:IPR002872; KEGG: ttr:Tter_0599 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: D1C8A2 Proline dehydrogenase; PFAM: Proline dehydrogenase.
  
    0.567
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.555
Krac_5983
KEGG: bra:BRADO4374 hypothetical protein; SPTR: A4YW42 Putative uncharacterized protein.
  
 
 0.450
Krac_2142
Peptidase U61 LD-carboxypeptidase A; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sma:SAV_6279 hypothetical protein; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: C4DRF6 Uncharacterized MccF-like protein (Microcin C7 resistance); PFAM: LD-carboxypeptidase.
 
  
 0.447
EFH90958.1
TPR repeat-containing protein; InterProIPR019734:IPR013026:IPR011990:IPR013105:IPR 001440; KEGG: npu:Npun_F4764 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: D1J927 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
   
 0.433
Krac_6972
Amino acid adenylation domain protein; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR010071:IPR009081:IPR006162:IPR020845:IPR 001242:IPR000873:IPR006163:IPR001031; KEGG: ava:Ava_1611 amino acid adenylation; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Thioesterase; SPTR: Q3MCQ2 Amino acid adenylation; TIGRFAM: amino acid adenylation domain protein; PFAM: Thioesterase domain; Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain.
  
  
 0.430
Krac_7978
Peptidase M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR011055:IPR016047; KEGG: dtu:Dtur_1101 peptidase M23; PFAM: Peptidase M23; SPTR: B8E2A3 Peptidase M23; PFAM: Peptidase family M23.
 
  
 0.404
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.