STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8585COGs: COG2367 Beta-lactamase class A; InterPro IPR000871:IPR012338; KEGG: rme:Rmet_4436 beta-lactamase class A-like protein; SPTR: Q1LEX5 Beta-lactamase class A-like protein; PFAM: D-alanyl-D-alanine carboxypeptidase. (268 aa)    
Predicted Functional Partners:
Krac_8584
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: cth:Cthe_2413 NLP/P60; PFAM: NLP/P60 protein; SPTR: C7HDD5 NLP/P60 protein; PFAM: NlpC/P60 family; Bacterial SH3 domain.
 
    0.822
Krac_3178
COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR011059:IPR006680:IPR012855; KEGG: tro:trd_1943 N-acyl-D-aspartate deacylase; PFAM: D-aminoacylase domain protein; amidohydrolase; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: D1CAN9 N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase, C-terminal region; Amidohydrolase family.
 
     0.570
Krac_8583
COGs: COG0506 Proline dehydrogenase; InterPro IPR008219:IPR002872; KEGG: ttr:Tter_0599 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: D1C8A2 Proline dehydrogenase; PFAM: Proline dehydrogenase.
       0.543
Krac_9185
Glycosyl transferase family 51; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460:IPR012338; KEGG: rrs:RoseRS_1948 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; SPTR: A5UUN3 Penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase.
   
 
 0.535
Krac_9313
COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR009045:IPR018130; KEGG: tte:TTE2535 D-alanyl-D-alanine dipeptidase; SPTR: Q8R784 D-alanyl-D-alanine dipeptidase; PFAM: D-ala-D-ala dipeptidase.
 
     0.534
EFH89772.1
COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR011059:IPR006680:IPR012855; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate ETC); PFAM: D-aminoacylase domain protein; amidohydrolase; PRIAM: N-acyl-D-amino-acid deacylase; SPTR: Q9V2D3 NdaD D-aminoacylase; PFAM: D-aminoacylase, C-terminal region; Amidohydrolase family.
 
     0.505
Krac_5048
COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: cai:Caci_5368 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: C7Q860 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase.
 
     0.436
Krac_5062
COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: cai:Caci_5368 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: C7Q860 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase.
 
     0.419
Krac_4552
Peptidase S58 DmpA; COGs: COG3191 L-aminopeptidase/D-esterase; InterPro IPR005321:IPR016117; KEGG: sti:Sthe_1955 peptidase S58 DmpA; PFAM: peptidase S58 DmpA; SPTR: D1C570 Peptidase S58 DmpA; manually curated; PFAM: Peptidase family S58.
  
     0.403
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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