STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_8921KEGG: nml:Namu_3036 hypothetical protein; SPTR: C8XAX0 Putative uncharacterized protein. (113 aa)    
Predicted Functional Partners:
EFH90118.1
COGs: COG3321 Polyketide synthase modules and related protein; InterProIPR016038:IPR001227:IPR000873:IPR006163:IPR 014030:IPR014031:IPR014043:IPR016039:IPR016035:IPR009081:I PR016036:IPR006162:IPR020845:IPR018201; KEGG: ava:Ava_4108 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase; AMP-dependent synthetase and ligase; phosphopantetheine-binding; Acyl transferase; SPTR: Q3M5M8 Beta-ketoacyl synthase; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; Beta-ketoacyl synthase, N-terminal domain; AMP-binding enzyme; Beta-ketoacyl synthase, C-terminal domain.
  
 0.997
EFH90488.1
AMP-dependent synthetase and ligase; COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845:IPR000873; KEGG: gbm:Gbem_2216 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: B5EE83 AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme.
   
 0.996
Krac_7556
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538:IPR019575:IPR001949; KEGG: swo:Swol_0657 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: B2BSJ8 NADPH-dependent sulfur oxidoreductase B subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit.
  
   0.973
Krac_2828
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR011046:IPR019781:IPR015943:IPR019782:IPR 017986:IPR001680; KEGG: rrs:RoseRS_0892 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: B4AXY5 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
    
 0.955
Krac_5887
KEGG: cyt:cce_5237 hypothetical protein; SPTR: B1X372 Putative uncharacterized protein.
    
 0.926
EFH90422.1
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR011046:IPR019782:IPR017986:IPR015943:IPR 019775:IPR019781:IPR001680; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: B8MUZ3 WD repeat-containing protein, putative; PFAM: WD domain, G-beta repeat.
   
 0.901
Krac_1629
COGs: COG2319 FOG: WD40 repeat; InterPro IPR015943:IPR011044:IPR001680; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; SPTR: A0YMI4 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
   
 0.901
Krac_2820
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019775:IPR011046:IPR019781:IPR015943:IPR 020472:IPR019782:IPR017986:IPR001680; KEGG: tcu:Tcur_3153 metallophosphoesterase; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: D1A9K8 Metallophosphoesterase; PFAM: WD domain, G-beta repeat.
   
 0.901
Krac_9034
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterProIPR019781:IPR019782:IPR017986:IPR011046:IPR 001680:IPR015943; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: A0YMI4 WD-40 repeat protein; PFAM: WD domain, G-beta repeat.
   
 0.901
Krac_9083
WD40 repeat domain containing protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR015943; KEGG: npu:Npun_F1222 WD-40 repeat-containing protein; SPTR: B4VNK4 Putative uncharacterized protein; PFAM: Eukaryotic translation initiation factor eIF2A.
   
 0.901
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.