STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_9374Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: cph:Cpha266_0893 pentapeptide repeat-containing protein; PFAM: pentapeptide repeat protein; SPTR: A0YP45 Putative uncharacterized protein; PFAM: Pentapeptide repeats (8 copies). (139 aa)    
Predicted Functional Partners:
Krac_1556
Pentapeptide repeat protein; InterPro IPR001646; KEGG: gvi:gll1976 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: B4B455 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.774
Krac_3372
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: mpl:Mpal_0869 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: B8GGH3 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.773
Krac_4491
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: mpl:Mpal_0869 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: B8GGH3 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.773
Krac_0316
Pentapeptide repeat protein; InterPro IPR001646; KEGG: ava:Ava_4923 serine/threonine protein kinase; PFAM: pentapeptide repeat protein; SPTR: B4B455 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.762
infA-2
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
       0.714
Krac_2494
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: hau:Haur_2341 pentapeptide repeat-containing protein; PFAM: pentapeptide repeat protein; SPTR: A9AYK3 Pentapeptide repeat protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.678
Krac_2133
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: sro:Sros_5479 hypothetical protein; PFAM: pentapeptide repeat protein; SPTR: C4ERC7 Uncharacterized low-complexity protein; PFAM: Pentapeptide repeats (8 copies).
  
     0.468
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.