STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_9461Hypothetical protein; InterPro IPR014736:IPR012337; KEGG: cti:pRALTA_0569 transposase, IS4 family; SPTR: A7C219 Transposase. (191 aa)    
Predicted Functional Partners:
Krac_2175
Cupin 2 conserved barrel domain protein; InterPro IPR014710:IPR013096:IPR011051; KEGG: neu:NE0622 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C2VKP7 Cupin 2, conserved barrel domain protein; PFAM: Cupin domain.
  
     0.495
Krac_6023
Transposase; KEGG: ana:all7563 transposase; SPTR: Q6H028 Putative transposase.
  
     0.438
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.