STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH89840.1Hypothetical protein; KEGG: dev:DhcVS_1282 SsrA integrase; SPTR: B3T0D1 Putative Resolvase, N terminal domain protein. (188 aa)    
Predicted Functional Partners:
EFH89839.1
Transcriptional regulator, TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: rca:Rcas_0136 transcriptional regulator, TrmB; PFAM: transcriptional regulator TrmB; SPTR: A7NFP5 Transcriptional regulator, TrmB; PFAM: Sugar-specific transcriptional regulator TrmB; Archaeal transcriptional regulator TrmB.
       0.452
EFH89838.1
Adenosylhomocysteinase; COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR016040:IPR000043:IPR015878; KEGG: sti:Sthe_1121 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; S-adenosyl-L-homocysteine hydrolase; PRIAM: Adenosylhomocysteinase; SPTR: D1C2U0 Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase.
       0.422
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.