STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmuk_1324PFAM: Translation initiation factor IF2/IF5; deoxyribonuclease/rho motif-related TRAM; SMART: Translation initiation factor IF2/IF5; KEGG: hma:rrnAC0138 translation initiation factor IF-2 subunit beta. (203 aa)    
Predicted Functional Partners:
eif2g
Protein synthesis factor GTP-binding; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.
  
 0.998
Hmuk_2880
PFAM: translation initiation factor 2, alpha subunit; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: hma:rrnAC3512 translation initiation factor IF-2 subunit alpha.
  
 0.998
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: hma:rrnAC1429 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.995
rps11
Ribosomal protein S11; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.995
rps6e
PFAM: Ribosomal protein S6e; KEGG: hma:rrnAC2212 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.939
rps4e
PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; KEGG: hma:rrnAC1600 30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
  
  0.938
rps15
PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: hma:rrnAC1426 30S ribosomal protein S15P.
  
  0.935
Hmuk_0627
TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: hma:rrnAC2445 translation initiation factor SUI1; Belongs to the SUI1 family.
  
 
 0.922
Hmuk_1813
PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: hma:rrnAC1619 GTP-binding protein-like.
   
 0.916
eif1a-2
Translation initiation factor eIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
 
 0.913
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
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