STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmuk_1861KEGG: hma:rrnAC3016 hypothetical protein. (62 aa)    
Predicted Functional Partners:
Hmuk_1862
KEGG: hma:rrnAC3015 hypothetical protein.
       0.862
Hmuk_1863
KEGG: nph:NP1100A cobalamin cluster protein CbiX 2 (ferredoxin-like iron-sulfur protein).
       0.862
Hmuk_1860
Magnesium chelatase; KEGG: hma:rrnAC3018 protporphyrin IX magnesium chelatase; PFAM: ATPase associated with various cellular activities AAA_5; von Willebrand factor type A; magnesium chelatase ChlI subunit; SMART: von Willebrand factor type A; AAA ATPase.
       0.661
Hmuk_1857
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hma:rrnAC3021 cobalt-precorrin-6Y C(5)- methyltransferase.
       0.478
Hmuk_1858
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: hma:rrnAC3020 precorrin-8X methylmutase.
       0.478
Hmuk_1859
Cobaltochelatase; PFAM: CobN/magnesium chelatase; KEGG: hma:rrnAC3019 cobalamin biosynthesis protein.
       0.478
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.