STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmuk_2319KEGG: hma:rrnAC0842 transcription repressor CinR. (114 aa)    
Predicted Functional Partners:
Hmuk_2318
PFAM: protein of unknown function DUF833; KEGG: nph:NP2764A hypothetical protein.
       0.794
Hmuk_2176
PFAM: protein of unknown function DUF343; KEGG: hma:rrnAC1284 hypothetical protein.
  
     0.715
Hmuk_3209
PFAM: protein of unknown function UPF0153; KEGG: nph:NP1134A hypothetical protein.
  
     0.700
Hmuk_1737
KEGG: hma:rrnAC1735 hypothetical protein.
  
     0.693
Hmuk_2812
KEGG: hma:rrnAC0234 hypothetical protein.
  
     0.693
Hmuk_0706
PFAM: Protein of unknown function DUF460; KEGG: hma:rrnAC2460 hypothetical protein.
  
     0.683
Hmuk_2356
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: hma:rrnAC0513 hypothetical protein.
  
     0.654
tfe
Transcription factor TFIIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongatio [...]
  
   
 0.652
Hmuk_2349
PFAM: Chorismate mutase; KEGG: hma:rrnAC0752 hypothetical protein.
 
   
 0.647
Hmuk_1314
PFAM: PRC-barrel domain protein; KEGG: hma:rrnAC3205 PRC-barrel domain-containing protein.
  
     0.645
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.