STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmuk_3097PFAM: Cytochrome b/b6 domain; KEGG: hma:rrnAC0732 cytochrome b6. (267 aa)    
Predicted Functional Partners:
Hmuk_0188
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: hma:rrnAC2023 NADH dehydrogenase I chain C D.
   
 
 0.998
Hmuk_1919
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: hma:rrnAC1449 NADH dehydrogenase/oxidoreductase.
   
 
 0.998
Hmuk_3098
KEGG: hma:rrnAC0733 Rieske (2Fe-2S) domain- containing protein.
  
 0.979
Hmuk_1958
PFAM: cytochrome c oxidase subunit III; KEGG: hma:rrnAC1399 cytochrome c oxidase polypeptide III.
 
 
 0.952
Hmuk_2797
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: hma:rrnAC0043 cytochrome c oxidase subunit II.
 
 
 0.950
Hmuk_1926
KEGG: hma:rrnAC1456 NADH dehydrogenase subunit 4; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.937
Hmuk_2473
PFAM: Rieske [2Fe-2S] domain protein; KEGG: hma:rrnAC1195 putative Rieske iron-sulfur protein.
 
 0.933
Hmuk_1920
PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: hma:rrnAC1450 NADH dehydrogenase/oxidoreductase.
  
 
 0.931
Hmuk_3096
KEGG: hma:rrnAC0731 cytochrome b(C-terminal)/b6.
 
     0.911
Hmuk_1921
TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: hma:rrnAC1451 NADH dehydrogenase/oxidoreductase-like protein.
  
 
 0.875
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
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