STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0092PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dde:Dde_0043 2-oxoglutarate ferredoxin oxidoreductase, delta subunit. (80 aa)    
Predicted Functional Partners:
Dret_0089
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit.
 
 0.998
Dret_0090
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dde:Dde_0045 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative.
 
 0.998
Dret_0091
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dma:DMR_07380 ketoisovalerate oxidoreductase subunit VorB.
 
 0.998
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 0.966
Dret_1400
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvl:Dvul_1221 pyruvate ferredoxin/flavodoxin oxidoreductase.
 
 0.963
Dret_0515
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; KEGG: dvm:DvMF_0184 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 0.962
Dret_1402
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dvm:DvMF_0603 2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 0.962
Dret_0439
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dvu:DVU0477 isocitrate dehydrogenase, NADP- dependent.
   
 
  0.941
Dret_0516
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvm:DvMF_0185 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit.
  
 0.940
Dret_1401
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dvl:Dvul_1222 2-oxoglutarate ferredoxin oxidoreductase subunit beta.
  
 0.940
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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