STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0136PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: dde:Dde_3204 cytochrome d ubiquinol oxidase, subunit I. (434 aa)    
Predicted Functional Partners:
Dret_0135
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: dma:DMR_28310 cytochrome d ubiquinol oxidase subunit II.
 0.999
Dret_0139
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein.
  
  
 0.895
Dret_0140
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein; KEGG: dma:DMR_17610 desulfoferrodoxin.
     
 0.889
Dret_1236
PFAM: Catalase related subgroup; Catalase domain protein; KEGG: csa:Csal_0803 catalase.
   
  
 0.870
Dret_2393
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
     
 0.866
Dret_0886
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dde:Dde_2749 rubredoxin.
  
  
 0.859
Dret_1885
PFAM: Di-haem cytochrome c peroxidase; KEGG: mlo:mll1163 methylamine utilization protein.
      
 0.859
Dret_1223
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: dps:DP2053 hypothetical protein.
  
  
 0.855
Dret_0191
PFAM: Rubrerythrin; KEGG: dde:Dde_1214 hypothetical protein.
      
 0.851
Dret_1205
PFAM: Rubrerythrin; KEGG: glo:Glov_1797 rubrerythrin.
      
 0.851
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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