STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0208PFAM: protein of unknown function DUF52; KEGG: dma:DMR_31670 hypothetical protein; Belongs to the MEMO1 family. (268 aa)    
Predicted Functional Partners:
Dret_0462
PFAM: AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein.
    0.987
Dret_0731
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dma:DMR_15300 hypothetical protein.
     0.976
Dret_0204
PFAM: Phosphoglycerate mutase; 6-phosphofructo-2- kinase; KEGG: dde:Dde_0511 6-phosphofructo-2-kinase.
  
    0.430
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
       0.428
Dret_0210
Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.428
Dret_1930
Phosphonopyruvate decarboxylase-related protein; KEGG: dma:DMR_28980 2,3-bisphosphoglycerate- independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein.
  
     0.425
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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