STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0388PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Alcohol dehydrogenase zinc- binding domain protein; KEGG: vvy:VV0357 putatve zinc-binding dehydrogenase. (721 aa)    
Predicted Functional Partners:
Dret_0392
PFAM: Heparinase II/III family protein; KEGG: dal:Dalk_1335 heparinase II/III family protein.
 
     0.926
Dret_0393
PFAM: glycosyl transferase group 1; KEGG: dal:Dalk_1334 glycosyl transferase group 1.
 
  
 0.922
Dret_2460
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dvm:DvMF_2599 xylose isomerase domain protein TIM barrel.
  
  
 0.900
Dret_0387
Coenzyme F390 synthetase-like protein; KEGG: vha:VIBHAR_00696 hypothetical protein.
 
   
 0.871
Dret_0395
KEGG: dal:Dalk_1333 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.830
Dret_0307
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; KEGG: dvl:Dvul_1704 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.823
Dret_1959
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.820
Dret_0386
KEGG: scl:sce7845 hypothetical protein.
 
     0.818
Dret_1051
8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; KEGG: dma:DMR_18980 8-amino-7-oxononanoate synthase.
  
  
 0.724
Dret_0129
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 
 0.710
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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